HITS Publications

2020

• Huck V, Chen P, Xu E, Tischer A, Klemm U, Aponte-Santamaría C, Mess C, Obser T, Kutzki F, König G, Denis CV, Gräter F, Wilmanns M, Auton M, Schneider SW, Schneppenheim R, Hennig J, Brehm MA (2020). Gain-of-Function Variant p.Pro2555Arg of von Willebrand Factor Increases Aggregate Size through Altering Stem Dynamics., Thromb Haemost,122(2):226-239. 1292
• Haupt S, Gleim N, Ahadova A, Bläker H, Doeberitz MvK, Kloor M, Heuveline V (2020). Computational model investigates the evolution of colonic crypts during Lynch syndrome carcinogenesis, biorxiv;2020.12.29.424555v1,[Preprint] 1199
• Nunes-Alves A, Mazzolari A, Merz KM (2020). What Makes a Paper Be Highly Cited? 60 Years of the Journal of Chemical Information and Modeling, J. Chem. Inf. Model. 60(12):5866-5867 1161
• Lever F, Mayer D, Picconi D, Metje J, Alisauskas S, Calegari F, Düsterer S, Ehlert C, Feifel R, Niebuhr M, Manschwetus B, Kuhlmann M, Mazza T, Robinson MS, Squibb RJ, Trabattoni A, Wallner M, Saalfrank P, Wolf TJA, Gühr M (2020). Ultrafast dynamics of 2-thiouracil investigated by time-resolved Auger spectroscopy, J. Phys. B: At. Mol. Opt. Phys. 54(1):014002 1572
• Morel B, Barbera P, Czech L, Bettisworth B, Hübner L, Lutteropp S, Serdari D, Kostaki E, Mamais I, Kozlov AM, Pavlidis P, Paraskevis D, Stamatakis A (2020). Phylogenetic analysis of SARS-CoV-2 data is difficult, Molecular Biology and Evolution,msaa314 1157
• Lähnemann D, Köster J, Szczurek E, McCarthy DJ, Hicks SC, Robinson MD, Vallejos CA, Campbell KR, Beerenwinkel N, Mahfouz A, Pinello L, Skums P, Stamatakis A, Attolini CS, Aparicio S, Baaijens J, Balvert M, Barbanson Bd, Cappuccio A, Corleone G, Dutilh BE, Florescu M, Guryev V, Holmer R, Jahn K, Lobo TJ, Keizer EM, Khatri I, Kielbasa SM, Korbel JO, Kozlov AM, Kuo T, Lelieveldt BP, Mandoiu II, Marioni JC, Marschall T, Mölder F, Niknejad A, Raczkowski L, Reinders M, Ridder Jd, Saliba A, Somarakis A, Stegle O, Theis FJ, Yang H, Zelikovsky A, McHardy AC, Raphael BJ, Shah SP, Schönhuth A (2020). Eleven grand challenges in single-cell data science, Genome Biol 21(1) 1093
• Mustafa G, Nandekar PP, Mukherjee G, Bruce NJ, Wade RC (2020). The Effect of Force-Field Parameters on Cytochrome P450-Membrane Interactions: Structure and Dynamics, Sci Rep 10(1),7284 1132
• Hon M, Bellinger EP, Hekker S, Stello D, Kuszlewicz JS (2020). Asteroseismic inference of subgiant evolutionary parameters with deep learning, Monthly Notices of the Royal Astronomical Society 499(2):2445-2461 1154
• Jeon S, Strube M (2020). Incremental Neural Lexical Coherence Modeling, In Proceedings of the 28th International Conference on Computational Linguistics (COLING), Online, December 2020, pp. 6752–6758 1156
• Blacker S, Bastian NF, Bauswein A, Blaschke DB, Fischer T, Oertel M, Soultanis T, Typel S (2020). Constraining the onset density of the hadron-quark phase transition with gravitational-wave observations, Phys. Rev. D 102(12),123023 1174
• Bestenlehner JM, Crowther PA, Caballero-Nieves SM, Schneider FR, Simón-Dı́az S, Brands SA, Koter Ad, Gräfener G, Herrero A, Langer N, Lennon DJ, Apellániz JM, Puls J, Vink JS (2020). The R136 star cluster dissected with Hubble Space Telescope/STIS – II. Physical properties of the most massive stars in R136, Monthly Notices of the Royal Astronomical Society 499(2):1918-1936 1180
• Sand C, Ohlmann ST, Schneider FR, Pakmor R, Röpke FK (2020). Common-envelope evolution with an asymptotic giant branch star, A&A 644:A60 1181
• Ballhausen A, Przybilla MJ, Jendrusch M, Haupt S, Pfaffendorf E, Seidler F, Witt J, Sanchez AH, Urban K, Draxlbauer M, Krausert S, Ahadova A, Kalteis MS, Pfuderer PL, Heid D, Stichel D, Gebert J, Bonsack M, Schott S, Bläker H, Seppälä T, Mecklin J, Broeke ST, Nielsen M, Heuveline V, Krzykalla J, Benner A, Riemer AB, Doeberitz MvK, Kloor M (2020). The shared frameshift mutation landscape of microsatellite-unstable cancers suggests immunoediting during tumor evolution, Nat Commun 11(1),4740 1192
• Lösel PD, Kamp Tvd, Jayme A, Ershov A, Faragó T, Pichler O, Jerome NT, Aadepu N, Bremer S, Chilingaryan SA, Heethoff M, Kopmann A, Odar J, Schmelzle S, Zuber M, Wittbrodt J, Baumbach T, Heuveline V (2020). Introducing Biomedisa as an open-source online platform for biomedical image segmentation, Nat Commun 11(1),5577 1200
• Lach F, Röpke F, Seitenzahl I, Coté B, Gronow S, Ruiter A (2020). Nucleosynthesis imprints from different Type Ia supernova explosion scenarios and implications for galactic chemical evolution, A&A 644:A118 1232
• Sand C, Ohlmann ST, Schneider FR, Pakmor R, Röpke FK (2020). Common-envelope evolution with an asymptotic giant branch star, A&A 644:A60 1233
• Suyu S, Huber S, Cañameras R, Kromer M, Schuldt S, Taubenberger S, Yıldırım A, Bonvin V, Chan J, Courbin F, Nöbauer U, Sim S, Sluse D (2020). HOLISMOKES. I. Highly Optimised Lensing Investigations of Supernovae, Microlensing Objects, and Kinematics of Ellipticals and Spirals, A&A 644:A162 1264
• Gornik SG, Bergheim BG, Morel B, Stamatakis A, Foulkes NS, Guse A (2020). Photoreceptor diversification accompanies the evolution of Anthozoa, Molecular Biology and Evolution,msaa304 1158
• Braud C, Hardmeier C, Li JJ, Louis A, Strube M (2020). Proceedings of the First Workshop on Computational Approaches to Discourse, Online 1502
• Polsterer KL (2020). Birds of a Feather Session on Machine Learning in Astronomy 1227
• Bläker H, Haupt S, Morak M, Holinski‐Feder E, Arnold A, Horst D, Sieber‐Frank J, Seidler F, Winterfeld M, Alwers E, Chang‐Claude J, Brenner H, Roth W, Engel C, Löffler M, Möslein G, Schackert H, Weitz J, Perne C, Aretz S, Hüneburg R, Schmiegel W, Vangala D, Rahner N, Steinke‐Lange V, Heuveline V, Doeberitz MvK, Ahadova A, Hoffmeister M, Kloor M (2020). Age‐dependent performance of BRAF mutation testing in Lynch syndrome diagnostics, Int. J. Cancer 147(10):2801-2810 1193
• Zhu J, Song C, Heuveline V, Li B, Li B, Han Z, Liu X (2020). Characterization Simulation of a Bulk MOSFET in Steady-State with SIPG Method, 2020 IEEE 15th International Conference on Solid-State & Integrated Circuit Technology (ICSICT),pp.1-3,IEEE 1202
• Benson D, Campagnolo C, Ranicki A, Rovi C (2020). Signature cocycles on the mapping class group and symplectic groups, Journal of Pure and Applied Algebra 224(11):106400 1219
• Schade P (2020). Phylogenetic species tree inference from gene trees despite paralogy (Master's Thesis), Computer Science, Karlsruhe Institute of Technology, Alexandros Stamatakis(HITS Tutor) 1877
• Ostaszewski M, Niarakis A, Mazein A, Kuperstein I, Phair R, Orta-Resendiz A, Singh V, Aghamiri SS, Acencio ML, Glaab E, Ruepp A, Fobo G, Montrone C, Brauner B, Frischman G, Gómez LCM, Somers J, Hoch M, Gupta SK, Scheel J, Borlinghaus H, Czauderna T, Schreiber F, Montagud A, Leon MPd, Funahashi A, Hiki Y, Hiroi N, Yamada TG, Dräger A, Renz A, Naveez M, Bocskei Z, Messina F, Börnigen D, Fergusson L, Conti M, Rameil M, Nakonecnij V, Vanhoefer J, Schmiester L, Wang M, Ackerman EE, Shoemaker J, Zucker J, Oxford K, Teuton J, Kocakaya E, Summak GY, Hanspers K, Kutmon M, Coort S, Eijssen L, Ehrhart F, Rex DAB, Slenter D, Martens M, Haw R, Jassal B, Matthews L, Orlic-Milacic M, Ribeiro AS, Rothfels K, Shamovsky V, Stephan R, Sevilla C, Varusai T, Ravel J, Fraser R, Ortseifen V, Marchesi S, Gawron P, Smula E, Heirendt L, Satagopam V, Wu G, Riutta A, Golebiewski M, Owen S, Goble C, Hu X, Overall RW, Maier D, Bauch A, Gyori BM, Bachman JA, Vega C, Grouès V, Vazquez M, Porras P, Licata L, Iannuccelli M, Sacco F, Nesterova A, Yuryev A, Waard Ad, Turei D, Luna A, Babur O, Soliman S, Valdeolivas A, Esteban-Medina M, Peña-Chilet M, Helikar T, Puniya BL, Modos D, Treveil A, Olbei M, Meulder BD, Dugourd A, Naldi A, Noel V, Calzone L, Sander C, Demir E, Korcsmaros T, Freeman TC, Augé F, Beckmann JS, Hasenauer J, Wolkenhauer O, Wilighagen EL, Pico AR, Evelo CT, Gillespie ME, Stein LD, Hermjakob H, D’Eustachio P, Saez-Rodriguez J, Dopazo J, Valencia A, Kitano H, Barillot E, Auffray C, Balling R, Schneider R (2020). COVID-19 Disease Map, a computational knowledge repository of SARS-CoV-2 virus-host interaction mechanisms, biorxiv;2020.10.26.356014v1,[Preprint] 1211
• Zapletal A, Höhler D, Sinz C, Stamatakis A (2020). SoftWipe – a tool and benchmark to assess scientific software quality, biorxiv;2020.10.07.330621v2,[Preprint] 1153
• Cruz-Chú ER, Villegas-Rodriguez G, Jäger T, Valentini L, Pugno N, Gkagkas K, Gräter F (2020). Mechanical characterization and induced crystallization in nanocomposites of thermoplastics and carbon nanotubes, Comput Mater,6(1):151 1255
• Barbera P, Czech L, Lutteropp S, Stamatakis A (2020). SCRAPP : A tool to assess the diversity of microbial samples from phylogenetic placements, Mol Ecol Resour,1755-0998.13255 1149
• Öztürk MA, Wade RC (2020). Computation of FRAP recovery times for linker histone – chromatin binding on the basis of Brownian dynamics simulations, Biochimica et Biophysica Acta (BBA) - General Subjects 1864(10):129653 1135
• Nunes-Alves A, Kokh DB, Wade RC (2020). Recent progress in molecular simulation methods for drug binding kinetics, Current Opinion in Structural Biology 64:126-133 1138
• Elsworth Y, Themeßl N, Hekker S, Chaplin W (2020). A Layered Approach to Robust Determination of Asteroseismic Parameters, Res. Notes AAS 4(10):177 1155
• Kramer M, Schneider F, Ohlmann S, Geier S, Schaffenroth V, Pakmor R, Röpke F (2020). Formation of sdB-stars via common envelope ejection by substellar companions, A&A 642:A97 1182
• Brenna C, Khan AuM, Picascia T, Sun Q, Heuveline V, Gretz N (2020). New technical approaches for 3D morphological imaging and quantification of measurements, Anat Rec 303(10):2702-2715 1194
• Bowman D, Burssens S, Simon-Diaz S, Edelmann P, Rogers T, Horst L, Ropke F, Aerts C (2020). VizieR Online Data Catalog: OB stars TESS phot. & high-resolution spectroscopy (Bowman+, 2020), VizieR Online Data Catalog:J/A+A/640/A36 1234
• Kramer M, Schneider F, Ohlmann S, Geier S, Schaffenroth V, Pakmor R, Röpke F (2020). Formation of sdB-stars via common envelope ejection by substellar companions, A&A 642:A97 1235
• Acebrón I, Righetto RD, Schoenherr C, Buhr Sd, Redondo P, Culley J, Rodríguez CF, Daday C, Biyani N, Llorca O, Byron A, Chami M, Gräter F, Boskovic J, Frame MC, Stahlberg H, Lietha D (2020). Structural basis of Focal Adhesion Kinase activation on lipid membranes., The EMBO Journal,39(19):e104743 1256
• Kokh DB, Doser B, Richter S, Ormersbach F, Cheng X, Wade RC (2020). A workflow for exploring ligand dissociation from a macromolecule: Efficient random acceleration molecular dynamics simulation and interaction fingerprint analysis of ligand trajectories, J. Chem. Phys. 153(12):125102 1142
• Gerstner P (2020). Analysis and Numerical Approximation of Dielectrophoretic Force Driven Flow Problems (Doctoral Thesis) 1197
• Horst L, Edelmann PVF, Andrássy R, Röpke FK, Bowman DM, Aerts C, Ratnasingam RP (2020). Fully compressible simulations of waves and core convection in main-sequence stars, A&A 641:A18 1140
• Galvin TJ, Huynh MT, Norris RP, Wang XR, Hopkins E, Polsterer K, Ralph NO, O’Brien AN, Heald GH (2020). Cataloguing the radio-sky with unsupervised machine learning: a new approach for the SKA era, Monthly Notices of the Royal Astronomical Society 497(3):2730-2758 1164
• Evans C, Lennon D, Langer N, Almeida L, Bartlett E, Bastian N, Bestenlehner J, Britavskiy N, Castro N, Clark S, Crowther P, Koter Ad, Mink Sd, Dufton P, Fossati L, Garcia M, Gieles M, Gräfener G, Grin N, Hénault-Brunet V, Herrero A, Howarth I, Izzard R, Kalari V, Apellániz JM, Markova N, Najarro F, Patrick L, Puls J, Ramı́rez-Agudelo O, Renzo M, Sabı́n-Sanjulián C, Sana H, Schneider F, Schootemeijer A, Simón-Dı́az S, Smartt S, Taylor W, Tramper F, Loon Jv, Villaseñor J, Vink J, Walborn N (2020). The VLT-FLAMES Tarantula Survey, The Messenger 181:22-27 1183
• Wu S, Everson RW, Schneider FR, Podsiadlowski P, Ramirez-Ruiz E (2020). The Art of Modeling Stellar Mergers and the Case of the B[e] Supergiant R4 in the Small Magellanic Cloud, ApJ 901(1):44 1184
• Höhler D (2020). Advanced Heuristics for Accelerating PaPaRa (Master's Thesis), Computer Science, Karlsruhe Institute of Technology, Alexandros Stamatakis(HITS Tutor) 1876
• Waltemath D, Golebiewski M, Blinov ML, Gleeson P, Hermjakob H, Hucka M, Inau ET, Keating SM, König M, Krebs O, Malik-Sheriff RS, Nickerson D, Oberortner E, Sauro HM, Schreiber F, Smith L, Stefan MI, Wittig U, Myers CJ (2020). The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE), Journal of Integrative Bioinformatics 17(2-3),20200005 1175
• Gottschling M, Czech L, Mahé F, Adl S, Dunthorn M (2020). The windblown: possible explanations for dinophyte DNA in forest soils, biorxiv;2020.08.07.242388v1,[Preprint] 1151
• Edgar RC, Taylor J, Altman T, Barbera P, Meleshko D, Lin V, Lohr D, Novakovsky G, Al-Shayeb B, Banfield JF, Korobeynikov A, Chikhi R, Babaian A (2020). Petabase-scale sequence alignment catalyses viral discovery, biorxiv;2020.08.07.241729v1,[Preprint] 1152
• Kozlov A, Alves J, Stamatakis A, Posada D (2020). CellPhy: accurate and fast probabilistic inference of single-cell phylogenies from scDNA-seq data, biorxiv;2020.07.31.230292v1,[Preprint] 1150
• Bowman DM, Burssens S, Simón-Díaz S, Edelmann PVF, Rogers TM, Horst L, Röpke FK, Aerts C (2020). Photometric detection of internal gravity waves in upper main-sequence stars, A&A 640:A36 1141
• Keating SM, Waltemath D, König M, Zhang F, Dräger A, Chaouiya C, Bergmann FT, Finney A, Gillespie CS, Helikar T, Hoops S, Malik‐Sheriff RS, Moodie SL, Moraru II, Myers CJ, Naldi A, Olivier BG, Sahle S, Schaff JC, Smith LP, Swat MJ, Thieffry D, Watanabe L, Wilkinson DJ, Blinov ML, Begley K, Faeder JR, Gómez HF, Hamm TM, Inagaki Y, Liebermeister W, Lister AL, Lucio D, Mjolsness E, Proctor CJ, Raman K, Rodriguez N, Shaffer CA, Shapiro BE, Stelling J, Swainston N, Tanimura N, Wagner J, Meier‐Schellersheim M, Sauro HM, Palsson B, Bolouri H, Kitano H, Funahashi A, Hermjakob H, Doyle JC, Hucka M, Adams RR, Allen NA, Angermann BR, Antoniotti M, Bader GD, Červený J, Courtot M, Cox CD, Pezze PD, Demir E, Denney WS, Dharuri H, Dorier J, Drasdo D, Ebrahim A, Eichner J, Elf J, Endler L, Evelo CT, Flamm C, Fleming RM, Fröhlich M, Glont M, Gonçalves E, Golebiewski M, Grabski H, Gutteridge A, Hachmeister D, Harris LA, Heavner BD, Henkel R, Hlavacek WS, Hu B, Hyduke DR, Jong H, Juty N, Karp PD, Karr JR, Kell DB, Keller R, Kiselev I, Klamt S, Klipp E, Knüpfer C, Kolpakov F, Krause F, Kutmon M, Laibe C, Lawless C, Li L, Loew LM, Machne R, Matsuoka Y, Mendes P, Mi H, Mittag F, Monteiro PT, Natarajan KN, Nielsen PM, Nguyen T, Palmisano A, Pettit J, Pfau T, Phair RD, Radivoyevitch T, Rohwer JM, Ruebenacker OA, Saez‐Rodriguez J, Scharm M, Schmidt H, Schreiber F, Schubert M, Schulte R, Sealfon SC, Smallbone K, Soliman S, Stefan MI, Sullivan DP, Takahashi K, Teusink B, Tolnay D, Vazirabad I, Kamp A, Wittig U, Wrzodek C, Wrzodek F, Xenarios I, Zhukova A, Zucker J (2020). SBML Level 3: an extensible format for the exchange and reuse of biological models, Mol Syst Biol 16(8) 1178
• Mazzolari A, Nunes-Alves A, Wahab HA, Amaro RE, Cournia Z, Merz KM (2020). Impact of the Journal of Chemical Information and Modeling Special Issue on Women in Computational Chemistry, J. Chem. Inf. Model. 60(7):3328-3330 1137
• Brunak S, Collin CB, Cathaoir KEÓ, Golebiewski M, Kirschner M, Kockum I, Moser H, Waltemath D (2020). Towards standardization guidelines for in silico approaches in personalized medicine, Journal of Integrative Bioinformatics 17(2-3) 1210
• Ehlert C, Klamroth T (2020). PSIXAS : A Psi4 plugin for efficient simulations of X‐ray absorption spectra based on the transition‐potential and Δ‐Kohn–Sham method, J Comput Chem 41(19):1781-1789 1230
• Son LACv, Mink SED, Broekgaarden FS, Renzo M, Justham S, Laplace E, Morán-Fraile J, Hendriks DD, Farmer R (2020). Polluting the Pair-instability Mass Gap for Binary Black Holes through Super-Eddington Accretion in Isolated Binaries, ApJ 897(1):100 1173
• Miller A, Magee M, Polin A, Maguire K, Zimmerman E, Yao Y, Sollerman J, Schulze S, Perley D, Kromer M, Dhawan S, Bulla M, Andreoni I, Bellm E, De K, Dekany R, Delacroix A, Fremling C, Gal-Yam A, Goldstein D, Golkhou V, Goobar A, Graham M, Irani I, Kasliwal M, Kaye S, Kim Y-, Laher R, Mahabal A, Masci F, Nugent P, Ofek E, Phinney E, Prentice S, Riddle R, Rigault M, Rusholme B, Schweyer T, Shupe D, Soumagnac M, Terreran G, Walters R, Yan L, Zolkower J, Kulkarni S (2020). The Spectacular Ultraviolet Flash from the Peculiar Type Ia Supernova 2019yvq, ApJ 898(1):56 1263
• Schreiber F, Sommer B, Czauderna T, Golebiewski M, Gorochowski TE, Hucka M, Keating SM, König M, Myers C, Nickerson D, Waltemath D (2020). Specifications of standards in systems and synthetic biology: status and developments in 2020, Journal of Integrative Bioinformatics 17(2-3) 1213
• Ehlert C, Liu XJ, Hamilton IP (2020). Au 21 cage structures and their magic number tri‐cations, Int J Quantum Chem 120(11) 1573
• Weidner P, Söhn M, Schroeder T, Helm L, Hauber V, Gutting T, Betge J, Röcken C, Rohrbacher FN, Pattabiraman VR, Bode JW, Seger R, Saar D, Nunes-Alves A, Wade RC, Ebert MPA, Burgermeister E (2020). Myotubularin-related protein 7 activates peroxisome proliferator-activated receptor-gamma, Oncogenesis 9(6),59 1143
• Langer N, Schürmann C, Stoll K, Marchant P, Lennon D, Mahy L, Mink Sd, Quast M, Riedel W, Sana H, Schneider P, Schootemeijer A, Wang C, Almeida L, Bestenlehner J, Bodensteiner J, Castro N, Clark S, Crowther P, Dufton P, Evans C, Fossati L, Gräfener G, Grassitelli L, Grin N, Hastings B, Herrero A, Koter Ad, Menon A, Patrick L, Puls J, Renzo M, Sander A, Schneider F, Sen K, Shenar T, Simón-Dı́as S, Tauris T, Tramper F, Vink J, Xu X- (2020). Properties of OB star-black hole systems derived from detailed binary evolution models, A&A 638:A39 1186
• Sadiq SK (2020). Fine-Tuning of Sequence Specificity by Near Attack Conformations in Enzyme-Catalyzed Peptide Hydrolysis, Catalysts 10(6):684 1209
• Hubner L (2020). Load-Balance and Fault-Tolerance for Massively Parallel Phylogenetic Inference (Master's Thesis), Computer Science, Karlsruhe Institute of Technology, Alexandros Stamatakis(HITS Tutor) 1875
• Diestelkoetter‐Bachert P, Beck R, Reckmann I, Hellwig A, Garcia‐Saez A, Zelman‐Hopf M, Hanke A, Alves AN, Wade RC, Mayer MP, Wieland F (2020). Structural characterization of an Arf dimer interface: molecular mechanism of Arf‐dependent membrane scission, FEBS Lett,1873-3468.13808 1134
• Group RCW (2020). RDA COVID-19 Recommendations and Guidelines, RDA COVID-19 Working Group. (2020). RDA COVID-19 Recommendations and Guidelines on Data Sharing. https://doi.org/10.15497/rda00052 1673
• Mathews K, Strube M (2020). A large harvested corpus of location metonymy, In Proceedings of the 12th International Conference on Language Resources and Evaluation, Marseille, France, 11--16 May 2020 1042
• Zapp C, Obarska-Kosinska A, Rennekamp B, Kurth M, Hudson DM, Mercadante D, Barayeu U, Dick TP, Denysenkov V, Prisner T, Bennati M, Daday C, Kappl R, Gräter F (2020). Mechanoradicals in tensed tendon collagen as a source of oxidative stress, Nat Commun 11(1),2315 1139
• Öztürk MA, De M, Cojocaru V, Wade RC (2020). Chromatosome Structure and Dynamics from Molecular Simulations, Annu. Rev. Phys. Chem. 71(1):101-119 1007
• Franz F, Daday C, Gräter F (2020). Advances in molecular simulations of protein mechanical properties and function, Current Opinion in Structural Biology 61:132-138 1095
• Lutteropp S, Kozlov AM, Stamatakis A (2020). A fast and memory-efficient implementation of the transfer bootstrap, Bioinformatics 36(7):2280-2281 1160
• Sun Z, Wienhard A, Zhang T (2020). Flows on the $$mathbf{PGL(V)}$$-Hitchin Component, Geom. Funct. Anal. 30(2):588-692 1221
• Yuan J, Han SB, Richter S, Wade RC, Kokh DB (2020). Druggability Assessment in TRAPP Using Machine Learning Approaches, J. Chem. Inf. Model. 60(3):1685-1699 1091
• Gronow S, Collins C, Ohlmann ST, Pakmor R, Kromer M, Seitenzahl IR, Sim SA, Röpke FK (2020). SNe Ia from double detonations: Impact of core-shell mixing on the carbon ignition mechanism, A&A 635:A169 1136
• Bulla M, Liu Z-, Röpke F, Sim S, Fink M, Kromer M, Pakmor R, Seitenzahl I (2020). White dwarf deflagrations for Type Iax supernovae: polarisation signatures from the explosion and companion interaction, A&A 635:A179 1238
• DANG N, GLORIEUX O (2020). Topological mixing of Weyl chamber flows, Ergod. Th. Dynam. Sys.:1-27 1218
• Bettisworth B, Stamatakis A (2020). RootDigger : a root placement program for phylogenetic trees, biorxiv;2020.02.13.935304v2,[Preprint] 1094
• Mahy L, Almeida L, Sana H, Clark J, Koter Ad, Mink Sd, Evans C, Grin N, Langer N, Moffat A, Schneider F, Shenar T, Tramper F (2020). The Tarantula Massive Binary Monitoring. IV. Double-lined photometric binaries, A&A 634:A119 1187
• Mahy L, Sana H, Abdul-Masih M, Almeida L, Langer N, Shenar T, Koter Ad, Mink Sd, Wit Sd, Grin N, Evans C, Moffat A, Schneider F, Barbá R, Clark J, Crowther P, Gräfener G, Lennon D, Tramper F, Vink J (2020). The Tarantula Massive Binary Monitoring. III. Atmosphere analysis of double-lined spectroscopic systems, A&A 634:A118 1188
• Bodensteiner J, Sana H, Mahy L, Patrick L, Koter Ad, Mink Sd, Evans C, Götberg Y, Langer N, Lennon D, Schneider F, Tramper F (2020). The young massive SMC cluster NGC 330 seen by MUSE. I. Observations and stellar content, A&A 634:A51 1189
• Shingles L, Sim S, Kromer M, Maguire K, Bulla M, Collins C, Ballance C, Michel A, Ramsbottom C, Röpke F, Seitenzahl I, Tyndall N (2020). Monte Carlo radiative transfer for the nebular phase of Type Ia supernovae, Monthly Notices of the Royal Astronomical Society 492(2):2029-2043 1239
• Rennekamp B, Kutzki F, Obarska-Kosinska A, Zapp C, Gräter F (2020). Hybrid Kinetic Monte Carlo/Molecular Dynamics Simulations of Bond Scissions in Proteins, J. Chem. Theory Comput. 16(1):553-563 1096
• Brehmer JR, Gneiting T (2020). Properization: Constructing proper scoring rules via Bayes acts, Annals of the Institute of Statistical Mathematics, 72:659–673 1004
• Jeon S, Strube M (2020). Centering-based Neural Coherence Modeling with Hierarchical Discourse Segments, In Proceedings of the 2020 Conference on Empirical Methods in Natural Language Processing (EMNLP), Online, November 2020, pp. 7458-7472 1144
• López F, Strube M (2020). A Fully Hyperbolic Neural Model for Hierarchical Multi-class Classification, In Proceedings of Findings of the Association for Computational Linguistics: EMNLP 2020, Online, November 2020, pp. 460-475 1145
• Müller M (2020). pyMMAX2: Deep Access to MMAX2 Projects from Python, In Proceedings of the 14th Linguistic Annotation Workshop, Online, December 2020, pp. 167-173. 1146
• Müller M, Ghosh S, Rey M, Wittig U, Müller W, Strube M (2020). Reconstructing Manual Information Extraction with DB-to-Document Backprojection: Experiments in the Life Science Domain, In Proceedings of the First Workshop on Scholarly Document Processing, Online, November 2020, pp. 81-90. 1147
• Chai H, Zhao W, Eger S, Strube M (2020). Evaluation of Coreference Resolution Systems Under Adversarial Attacks, In Proceedings of the First Workshop on Computational Approaches to Discourse, Online, November 2020, pp. 154-159. 1148
• Holderbach S, Adam L, Jayaram B, Wade RC, Mukherjee G (2020). RASPD+: Fast Protein-Ligand Binding Free Energy Prediction Using Simplified Physicochemical Features, Frontiers in Molecular Biosciences 7:393 1159
• Berger B, Amaral M, Kokh DB, Nunes-Alves A, Musil D, Heinrich T, Schröder M, Neil R, Wang J, Navratilova I, Bomke J, Elkins JM, Müller S, Frech M, Wade RC, Knapp S (2020). Structure-Kinetic-Relationship Reveals the Mechanism of Selectivity of FAK Inhibitors Over PYK2, SSRN Journal 1168
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