Structural bioinformatics approach to exploring transient binding pockets in proteins (Bachelor's Thesis), Faculty of Biosciences and Faculty of Chemistry and Earth Sciences, Ruprecht-Karls University, Heidelberg 1899
Siess L, Bermúdez-Bustamante LC, Marco OD, Price DJ, González-Bolívar M, Mu C, Lau MYM, Hirai R, Danilovich T (2024). Dusty Common Envelope Evolution, Galaxies 12(6):82 1894
Suhrkamp A, Stamatakis A (2024). Improving DNA-Barcoding Databases: A Framework for Error Detection and Correction in the Barcode of Life Data System (BOLD) (Master's Thesis)1907
Uhl TN, Schimek M, Hübner L, Hespe D, Kurpicz F, Seemaier D, Stelz C, Sanders P (2024). KaMPIng: Flexible and (Near) Zero-Overhead C++ Bindings for MPI, SC24: International Conference for High Performance Computing, Networking, Storage and Analysis,pp.1-21,IEEE 1901
Pigeot I, Ahrens W, Darms J, Fluck J, Golebiewski M, Hahn HK, Hu X, Intemann T, Kasbohm E, Kirsten T, Klammt S, Klopfenstein SAI, Lassen-Schmidt B, Peters M, Sax U, Waltemath D, Schmidt CO (2024). Making Epidemiological and Clinical Studies FAIR Using the Example of COVID-19, Datenbank Spektrum 24(2):117-128 1862
Häuser L, Jäger G, Stamatakis A (2024). Computational Approaches for Integrating out Subjectivity in Cognate Synonym Selection, Luise Häuser, Gerhard Jäger, and Alexandros Stamatakis. 2024. Computational Approaches for Integrating out Subjectivity in Cognate Synonym Selection. In Proceedings of the Society for Computation in Linguistics 2024, pages 162–172, Irvine, CA. Association for Computational Linguistics. 1906
Structural bioinformatics approach to exploring transient binding pockets in proteins, (Bachelor’s Thesis), Biochemistry, Faculty of Biosciences and Faculty of Chemistry and Earth Sciences, Ruprecht-Karls University, Heidelberg (Bachelor's Thesis)1874
Agrawal K, Petrank E, Hespe D, Hübner L, Kurpicz F, Sanders P, Schimek M, Seemaier D, Uhl TN (2024). Brief Announcement: (Near) Zero-Overhead C++ Bindings for MPI, Proceedings of the 36th ACM Symposium on Parallelism in Algorithms and Architectures,pp.289-291,ACM 1903
Siebelt D, Hübner L, Stamatakis A (2024). Faster Sorting of Aligned DNA-Read Files (Bachelor's Thesis)1911
Elias-Rosa N, Brennan S, Benetti S, Cappellaro E, Pastorello A, Kozyreva A, Lundqvist P, Fraser M, Anderson J, Cai Y-, Chen T-, Dennefeld M, Gromadzki M, Gutiérrez C, Ihanec N, Inserra C, Kankare E, Kotak R, Mattila S, Moran S, Müller-Bravo T, Pessi P, Pignata G, Reguitti A, Reynolds T, Smartt S, Smith K, Tartaglia L, Valerin G, Boer Td, Chambers K, Gal-Yam A, Gao H, Geier S, Mazzali P, Nicholl M, Ragosta F, Rest A, Yaron O, Young D (2024). SN 2020pvb: A Type IIn-P supernova with a precursor outburst, A&A 686:A13 1848
Lopez VK, Cramer EY, Pagano R, Drake JM, O'Dea EB, Adee M, Ayer T, Chhatwal J, Dalgic OO, Ladd MA, Linas BP, Mueller PP, Xiao J, Bracher J, Castro Rivadeneira AJ, Gerding A, Gneiting T, Huang Y, Jayawardena D, Kanji AH, Le K, Mühlemann A, Niemi J, Ray EL, Stark A, Wang Y, Wattanachit N, Zorn MW, Pei S, Shaman J, Yamana TK, Tarasewicz SR, Wilson DJ, Baccam S, Gurung H, Stage S, Suchoski B, Gao L, Gu Z, Kim M, Li X, Wang G, Wang L, Wang Y, Yu S, Gardner L, Jindal S, Marshall M, Nixon K, Dent J, Hill AL, Kaminsky J, Lee EC, Lemaitre JC, Lessler J, Smith CP, Truelove S, Kinsey M, Mullany LC, Rainwater-Lovett K, Shin L, Tallaksen K, Wilson S, Karlen D, Castro L, Fairchild G, Michaud IJ, Osthus D, Bian J, Cao W, Gao Z, Lavista Ferres J, Li C, Liu T, Xie X, Zhang S, Zheng S, Chinazzi M, Davis JT, Mu K, Pastory y Piontti A, Vespignani A, Xiong X, Walraven R, Chen J, Gu Q, Wang L, Xu P, Zhang W, Zou D, Gibson GC, Sheldon D, Srivastava A, Adiga A, Hurt B, Kaur G, Lewis B, Marathe M, Peddireddy AS, Porebski P, Venkatramanan S, Wang L, Prasad PV, Walker JW, Webber AE, Slayton RB, Biggerstaff M, Reich NG, Johansson MA (2024). Challenges of COVID-19 case forecasting in the US, 2020–2021, PLOS Computational Biology, 20(5):e1011200 1843
Frost A, Sana H, Mahy L, Wade G, Barron J, Bouquin J-L, Mérand A, Schneider F, Shenar T, Barbá R, Bowman D, Fabry M, Farhang A, Marchant P, Morrell N, Smoker J (2024). A magnetic massive star has experienced a stellar merger, Science 384(6692):214-217 1929
Wiegert J, Haag J, Höhler D, Stamatakis A (2024). Use Cases of Predictive Modeling for Phylogenetic Inference and Placements (Master's Thesis)1912
Stiller J, Feng S, Chowdhury A, Rivas-González I, Duchêne DA, Fang Q, Deng Y, Kozlov A, Stamatakis A, Claramunt S, Nguyen JMT, Ho SYW, Faircloth BC, Haag J, Houde P, Cracraft J, Balaban M, Mai U, Chen G, Gao R, Zhou C, Xie Y, Huang Z, Cao Z, Yan Z, Ogilvie HA, Nakhleh L, Lindow B, Morel B, Fjeldså J, Hosner PA, Fonseca RRd, Petersen B, Tobias JA, Székely T, Kennedy JD, Reeve AH, Liker A, Stervander M, Antunes A, Tietze DT, Bertelsen M, Lei F, Rahbek C, Graves GR, Schierup MH, Warnow T, Braun EL, Gilbert MTP, Jarvis ED, Mirarab S, Zhang G (2024). Complexity of avian evolution revealed by family-level genomes, Nature 1832
Weidner P, Saar D, Söhn M, Schroeder T, Yu Y, Zöllner FG, Ponelies N, Zhou X, Zwicky A, Rohrbacher FN, Pattabiraman VR, Tanriver M, Bauer A, Ahmed H, Ametamey SM, Riffel P, Seger R, Bode JW, Wade RC, Ebert MP, Kragelund BB, Burgermeister E (2024). Myotubularin-related-protein-7 inhibits mutant (G12V) K-RAS by direct interaction, Cancer Letters 588:216783 1841
Häuser L, Jäger G, List J, Rama T, Stamatakis A (2024). Are Sounds Sound for Phylogenetic Reconstruction?, Luise Häuser, Gerhard Jäger, Johann-Mattis List, Taraka Rama, and Alexandros Stamatakis. 2024. Are Sounds Sound for Phylogenetic Reconstruction?. In Proceedings of the 6th Workshop on Research in Computational Linguistic Typology and Multilingual NLP, pages 78–87, St. Julian's, Malta. Association for Computational Linguistics. 1905
Investigation of the impact of mutations in Cytochrome P450 reductase on the rate of electron transfer to Cytochrome P450 by molecular dynamics simulations (Master's Thesis), Chemistry, Department of Chemistry, Ruprecht-Karls University, Heidelberg 1898
Schulze S, Fransson C, Kozyreva A, Chen T, Yaron O, Jerkstrand A, Gal-Yam A, Sollerman J, Yan L, Kangas T, Leloudas G, Omand CM, Smartt SJ, Yang Y, Nicholl M, Sarin N, Yao Y, Brink TG, Sharon A, Rossi A, Chen P, Chen Z, Cikota A, De K, Drake AJ, Filippenko AV, Fremling C, Fréour L, Fynbo JP, Ho AY, Inserra C, Irani I, Kuncarayakti H, Lunnan R, Mazzali P, Ofek EO, Palazzi E, Perley DA, Pursiainen M, Rothberg B, Shingles LJ, Smith K, Taggart K, Tartaglia L, Zheng W, Anderson JP, Cassara L, Christensen E, Djorgovski SG, Galbany L, Gkini A, Graham MJ, Gromadzki M, Groom SL, Hiramatsu D, Howell DA, Kasliwal MM, McCully C, Müller-Bravo TE, Paiano S, Paraskeva E, Pessi PJ, Polishook D, Rau A, Rigault M, Rusholme B (2024). 1100 days in the life of the supernova 2018ibb. The best pair-instability supernova candidate, to date, A&A 683:A223 1847
Brehmer JR, Gneiting T, Herrmann M, Marzocchi W, Schlather M, Strokorb K (2024). Comparative evaluation of point process forecasts, Annals of the Institute of Statistical Mathematics, 76:47–71 1692
Arend D, Conte AD, Feser M, Gadiya Y, Gaignard A, Castro LJ, Mičetić I, Moretti S, Neumann S, Rayya N, Tsueng G, Willighagen E, Wittig U (2024). Bioschemas Resource Index for Chem and Plants, osf.io/yxunp,[Preprint] 1777
Back S, Aspuru-Guzik A, Ceriotti M, Gryn'ova G, Grzybowski B, Gu GH, Hein J, Hippalgaonkar K, Hormázabal R, Jung Y, Kim S, Kim WY, Moosavi SM, Noh J, Park C, Schrier J, Schwaller P, Tsuda K, Vegge T, Lilienfeld OAv, Walsh A (2024). Accelerated chemical science with AI, Digital Discovery 3(1):23-33 1772
Schimunek J, Seidl P, Elez K, Hempel T, Le T, Noé F, Olsson S, Raich L, Winter R, Gokcan H, Gusev F, Gutkin EM, Isayev O, Kurnikova MG, Narangoda CH, Zubatyuk R, Bosko IP, Furs KV, Karpenko AD, Kornoushenko YV, Shuldau M, Yushkevich A, Benabderrahmane M, Bousquet-Melou P, Bureau R, Charton B, Cirou B, Gil G, Allen WJ, Sirimulla S, Watowich S, Antonopoulos N, Epitropakis N, Krasoulis A, Pitsikalis V, Theodorakis S, Kozlovskii I, Maliutin A, Medvedev A, Popov P, Zaretckii M, Eghbal-zadeh H, Halmich C, Hochreiter S, Mayr A, Ruch P, Widrich M, Berenger F, Kumar A, Yamanishi Y, Zhang K, Bengio E, Bengio Y, Jain M, Korablyov M, Liu C, Gilles M, Glaab E, Barnsley K, Iyengar SM, Ondrechen MJ, Haupt VJ, Kaiser F, Schroeder M, Pugliese L, Albani S, Athanasiou C, Beccari A, Carloni P, D'Arrigo G, Gianquinto E, Goßen J, Hanke A, Joseph BP, Kokh DB, Kovachka S, Manelfi C, Mukherjee G, Muñiz-Chicharro A, Musiani F, Nunes-Alves A, Paiardi G, Rossetti G, Sadiq SK, Spyrakis F, Talarico C, Tsengenes A, Wade R, Copeland C, Gaiser J, Olson DR, Roy A, Venkatraman V, Wheeler TJ, Arthanari H, Blaschitz K, Cespugli M, Durmaz V, Fackeldey K, Fischer PD, Gorgulla C, Gruber C, Gruber K, Hetmann M, Kinney JE, Das KMP, Pandita S, Singh A, Steinkellner G, Tesseyre G, Wagner G, Wang Z, Yust RJ, Druzhilovskiy DS, Filimonov D, Pogodin PV, Poroikov V, Rudik AV, Stolbov LA, Veselovsky AV, Rosa MD, Simone GD, Gulotta MR, Lombino J, Mekni N, Perricone U, Casini A, Embree A, Gordon DB, Lei D, Pratt K, Voigt CA, Chen K, Jacob Y, Krischuns T, Lafaye P, Zettor A, Rodríguez ML, White KM, Fearon D, Delft Fv, Walsh MA, Horvath D, Brooks CL, Falsafi B, Ford B, García-Sastre A, Lee SY, Naffakh N, Varnek A, Klambauer G, Hermans TM (2024). A community effort in SARS‐CoV‐2 drug discovery, Molecular Informatics 43(1),e202300262 1723
D'Anna F, Jareborg N, Jetten M, Ahokas M, Alper P, Andrews R, Bösl K, D’Altri T, Faria D, Fatima N, Fuchs S, Garrard C, Gu W, Heil KF, Kallberg Y, Licciulli F, Lübke N, Melo AMP, Mičetić I, Oliveira J, Oulas A, Palagi PM, Poterlowicz K, Perez-Sitja X, Ruch P, Sansone S, Schnitzer H, Gelder Cv, Vergoulis T, Wibberg D, Wittig U, Leskošek B, Vondrasek J, Andrabi M (2024). A research data management (RDM) community for ELIXIR, F1000Res 13:230 1829
Ruff R, Reiser P, Stühmer J, Friederich P (2024). Connectivity optimized nested line graph networks for crystal structures, Digital Discovery 3(3):594–601 1831
We use cookies on our website. Some of them are essential, while others help us improve this site and your experience.If you are under 16 and wish to give consent to optional services, you must ask your legal guardians for permission.We use cookies and other technologies on our website. Some of them are essential, while others help us to improve this website and your experience.Personal data may be processed (e.g. IP addresses), for example for personalized ads and content or ad and content measurement.You can find more information about the use of your data in our privacy policy.You can revoke or adjust your selection at any time under Settings.
If you are under 16 and wish to give consent to optional services, you must ask your legal guardians for permission.We use cookies and other technologies on our website. Some of them are essential, while others help us to improve this website and your experience.Personal data may be processed (e.g. IP addresses), for example for personalized ads and content or ad and content measurement.You can find more information about the use of your data in our privacy policy.Here you will find an overview of all cookies used. You can give your consent to entire categories or have further information displayed and thus select only certain cookies.